Detailed information of SNP:
|
SNP ID:
sf0620626984(Gbrowse)
Chromosome: chr06 Position: 20626984 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1355 | 56.16% | 43.84% |
| All Indica | 758 | 89.18% | 10.82% |
| All Japonica | 495 | 1.62% | 98.38% |
| Aus | 54 | 87.04% | 12.96% |
| Indica I | 350 | 88.00% | 12.00% |
| Indica II | 208 | 93.75% | 6.25% |
| Indica Intermediate | 200 | 86.50% | 13.50% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 66 | 1.52% | 98.48% |
| Group VI/Aromatic | 10 | 100.00% | 0.00% |
| Intermediate | 38 | 52.63% | 47.37% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620626984 | G->A | LOC_Os06g35390(LOC_Os06g35390.1) | Non-Synonymous SNP |