Detailed information of SNP:
|
SNP ID:
sf0620629390(Gbrowse)
Chromosome: chr06 Position: 20629390 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 63.49% | 36.51% |
| All Indica | 797 | 95.11% | 4.89% |
| All Japonica | 496 | 6.25% | 93.75% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 93.05% | 6.95% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 4.18% | 95.82% |
| Tropical Japonica | 93 | 5.38% | 94.62% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620629390 | T->C | INTERGENIC | None |