Detailed information of SNP:
SNP ID:
sf0620631646(Gbrowse)
Chromosome: chr06 Position: 20631646 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1419 | 83.09% | 16.91% |
All Indica | 799 | 99.00% | 1.00% |
All Japonica | 497 | 55.53% | 44.47% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 99.73% | 0.27% |
Indica II | 213 | 96.71% | 3.29% |
Indica Intermediate | 211 | 100.00% | 0.00% |
Temperate Japonica | 335 | 71.64% | 28.36% |
Tropical Japonica | 94 | 11.70% | 88.30% |
Japonica Intermediate | 68 | 36.76% | 63.24% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0620631646 | G->A | INTERGENIC | None |