Detailed information of SNP:
SNP ID:
sf0620692333(Gbrowse)
Chromosome: chr06 Position: 20692333 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1415 | 61.84% | 38.16% |
All Indica | 796 | 97.61% | 2.39% |
All Japonica | 497 | 1.41% | 98.59% |
Aus | 67 | 98.51% | 1.49% |
Indica I | 373 | 98.12% | 1.88% |
Indica II | 213 | 95.31% | 4.69% |
Indica Intermediate | 210 | 99.05% | 0.95% |
Temperate Japonica | 335 | 0.90% | 99.10% |
Tropical Japonica | 94 | 3.19% | 96.81% |
Japonica Intermediate | 68 | 1.47% | 98.53% |
Group VI/Aromatic | 14 | 21.43% | 78.57% |
Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0620692333 | T->C | INTERGENIC | None |