Detailed information of SNP:
|
SNP ID:
sf0620695594(Gbrowse)
Chromosome: chr06 Position: 20695594 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 60.34% | 39.66% |
| All Indica | 799 | 98.50% | 1.50% |
| All Japonica | 481 | 4.78% | 95.22% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 326 | 1.53% | 98.47% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 61 | 24.59% | 75.41% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620695594 | T->C | INTERGENIC | None |