Detailed information of SNP:
|
SNP ID:
sf0620696442(Gbrowse)
Chromosome: chr06 Position: 20696442 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1394 | 66.86% | 33.14% |
| All Indica | 799 | 98.75% | 1.25% |
| All Japonica | 472 | 6.99% | 93.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 328 | 4.57% | 95.43% |
| Tropical Japonica | 88 | 6.82% | 93.18% |
| Japonica Intermediate | 56 | 21.43% | 78.57% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620696442 | A->T | INTERGENIC | None |