Detailed information of SNP:
|
SNP ID:
sf0620706242(Gbrowse)
Chromosome: chr06 Position: 20706242 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 93.32% | 6.68% |
| All Indica | 795 | 99.37% | 0.63% |
| All Japonica | 497 | 96.18% | 3.82% |
| Aus | 61 | 8.20% | 91.80% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 211 | 98.10% | 1.90% |
| Indica Intermediate | 209 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620706242 | C->T | INTERGENIC | None |