Detailed information of SNP:
|
SNP ID:
sf0620732766(Gbrowse)
Chromosome: chr06 Position: 20732766 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1401 | 53.39% | 46.61% |
| All Indica | 782 | 35.04% | 64.96% |
| All Japonica | 497 | 91.75% | 8.25% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 363 | 40.22% | 59.78% |
| Indica II | 211 | 27.01% | 72.99% |
| Indica Intermediate | 208 | 34.13% | 65.87% |
| Temperate Japonica | 335 | 95.52% | 4.48% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620732766 | A->G | INTERGENIC | None |