Detailed information of SNP:
|
SNP ID:
sf0620733927(Gbrowse)
Chromosome: chr06 Position: 20733927 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1356 | 55.38% | 44.62% |
| All Indica | 739 | 21.52% | 78.48% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 356 | 23.88% | 76.12% |
| Indica II | 194 | 19.07% | 80.93% |
| Indica Intermediate | 189 | 19.58% | 80.42% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620733927 | A->G | INTERGENIC | None |