Detailed information of SNP:
|
SNP ID:
sf0620771019(Gbrowse)
Chromosome: chr06 Position: 20771019 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 84.57% | 15.43% |
| All Indica | 799 | 85.36% | 14.64% |
| All Japonica | 497 | 95.98% | 4.02% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 66.20% | 33.80% |
| Indica Intermediate | 211 | 85.78% | 14.22% |
| Temperate Japonica | 335 | 96.72% | 3.28% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620771019 | G->A | INTERGENIC | None |