Detailed information of SNP:
|
SNP ID:
sf0620771512(Gbrowse)
Chromosome: chr06 Position: 20771512 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 50.74% | 49.26% |
| All Indica | 797 | 83.94% | 16.06% |
| All Japonica | 497 | 4.43% | 95.57% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 213 | 62.91% | 37.09% |
| Indica Intermediate | 209 | 84.21% | 15.79% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 20.59% | 79.41% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620771512 | G->A | INTERGENIC | None |