Detailed information of SNP:
|
SNP ID:
sf0620774611(Gbrowse)
Chromosome: chr06 Position: 20774611 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 85.43% | 14.57% |
| All Indica | 789 | 86.44% | 13.56% |
| All Japonica | 496 | 95.77% | 4.23% |
| Aus | 66 | 6.06% | 93.94% |
| Indica I | 374 | 96.79% | 3.21% |
| Indica II | 206 | 68.45% | 31.55% |
| Indica Intermediate | 209 | 85.65% | 14.35% |
| Temperate Japonica | 334 | 96.71% | 3.29% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620774611 | G->A | INTERGENIC | None |