Detailed information of SNP:
|
SNP ID:
sf0620777094(Gbrowse)
Chromosome: chr06 Position: 20777094 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 50.04% | 49.96% |
| All Indica | 796 | 83.04% | 16.96% |
| All Japonica | 497 | 4.43% | 95.57% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 94.92% | 5.08% |
| Indica II | 213 | 61.03% | 38.97% |
| Indica Intermediate | 209 | 84.21% | 15.79% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 20.59% | 79.41% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620777094 | A->G | INTERGENIC | None |