Detailed information of SNP:
|
SNP ID:
sf0620819529(Gbrowse)
Chromosome: chr06 Position: 20819529 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1406 | 66.15% | 33.85% |
| All Indica | 799 | 99.12% | 0.88% |
| All Japonica | 487 | 5.95% | 94.05% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 329 | 2.13% | 97.87% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 64 | 26.56% | 73.44% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 74.36% | 25.64% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620819529 | C->T | INTERGENIC | None |