Detailed information of SNP:
|
SNP ID:
sf0620878826(Gbrowse)
Chromosome: chr06 Position: 20878826 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1338 | 60.61% | 39.39% |
| All Indica | 794 | 98.74% | 1.26% |
| All Japonica | 495 | 0.81% | 99.19% |
| Aus | 5 | 60.00% | 40.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 210 | 96.19% | 3.81% |
| Indica Intermediate | 209 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 92 | 1.09% | 98.91% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 7 | 0.00% | 100.00% |
| Intermediate | 37 | 54.05% | 45.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620878826 | T->C | LOC_Os06g35780(LOC_Os06g35780.1) | INTRON |