Detailed information of SNP:
|
SNP ID:
sf0620903321(Gbrowse)
Chromosome: chr06 Position: 20903321 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1291 | 92.10% | 7.90% |
| All Indica | 795 | 99.62% | 0.38% |
| All Japonica | 376 | 74.73% | 25.27% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 209 | 98.56% | 1.44% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 263 | 89.35% | 10.65% |
| Tropical Japonica | 64 | 23.44% | 76.56% |
| Japonica Intermediate | 49 | 63.27% | 36.73% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 89.74% | 10.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620903321 | G->A | INTERGENIC | None |