Detailed information of SNP:
|
SNP ID:
sf0620930747(Gbrowse)
Chromosome: chr06 Position: 20930747 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 55.45% | 44.55% |
| All Indica | 794 | 84.51% | 15.49% |
| All Japonica | 497 | 1.61% | 98.39% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 372 | 95.16% | 4.84% |
| Indica II | 213 | 61.03% | 38.97% |
| Indica Intermediate | 209 | 89.47% | 10.53% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620930747 | T->G | LOC_Os06g35880(LOC_Os06g35880.1) | Non-Synonymous SNP |