Detailed information of SNP:
|
SNP ID:
sf0620935636(Gbrowse)
Chromosome: chr06 Position: 20935636 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1383 | 61.17% | 38.83% |
| All Indica | 772 | 32.64% | 67.36% |
| All Japonica | 495 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 362 | 23.20% | 76.80% |
| Indica II | 210 | 52.38% | 47.62% |
| Indica Intermediate | 200 | 29.00% | 71.00% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 9 | 77.78% | 22.22% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620935636 | G->A | INTERGENIC | None |