Detailed information of SNP:
|
SNP ID:
sf0620950872(Gbrowse)
Chromosome: chr06 Position: 20950872 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 85.90% | 14.10% |
| All Indica | 798 | 85.21% | 14.79% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 374 | 95.99% | 4.01% |
| Indica II | 213 | 63.38% | 36.62% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620950872 | C->T | LOC_Os06g35910(LOC_Os06g35910.2) | INTRON |
| sf0620950872 | C->T | LOC_Os06g35910(LOC_Os06g35910.1) | INTRON |