Detailed information of SNP:
|
SNP ID:
sf0620988291(Gbrowse)
Chromosome: chr06 Position: 20988291 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 59.42% | 40.58% |
| All Indica | 799 | 99.12% | 0.88% |
| All Japonica | 496 | 2.02% | 97.98% |
| Aus | 65 | 15.38% | 84.62% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 67 | 1.49% | 98.51% |
| Group VI/Aromatic | 10 | 20.00% | 80.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620988291 | G->C | INTERGENIC | None |