Detailed information of SNP:
|
SNP ID:
sf0621000706(Gbrowse)
Chromosome: chr06 Position: 21000706 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 57.30% | 42.70% |
| All Indica | 799 | 86.73% | 13.27% |
| All Japonica | 496 | 2.22% | 97.78% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 63.85% | 36.15% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 334 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0621000706 | G->A | INTERGENIC | None |