Detailed information of SNP:
|
SNP ID:
sf0621047544(Gbrowse)
Chromosome: chr06 Position: 21047544 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 88.92% | 11.08% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 487 | 69.82% | 30.18% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 326 | 81.60% | 18.40% |
| Tropical Japonica | 94 | 40.43% | 59.57% |
| Japonica Intermediate | 67 | 53.73% | 46.27% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0621047544 | G->A | INTERGENIC | None |