Detailed information of SNP:
|
SNP ID:
sf0621052791(Gbrowse)
Chromosome: chr06 Position: 21052791 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 60.34% | 39.66% |
| All Indica | 795 | 93.08% | 6.92% |
| All Japonica | 497 | 2.41% | 97.59% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 93.32% | 6.68% |
| Indica II | 211 | 91.47% | 8.53% |
| Indica Intermediate | 210 | 94.29% | 5.71% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 13 | 61.54% | 38.46% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0621052791 | T->G | INTERGENIC | None |