Detailed information of SNP:
|
SNP ID:
sf0621075901(Gbrowse)
Chromosome: chr06 Position: 21075901 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 68.64% | 31.36% |
| All Indica | 783 | 45.72% | 54.28% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 364 | 30.77% | 69.23% |
| Indica II | 208 | 45.67% | 54.33% |
| Indica Intermediate | 211 | 71.56% | 28.44% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0621075901 | G->A | LOC_Os06g36060(LOC_Os06g36060.1) | Synonymous |