Detailed information of SNP:
SNP ID:
sf0621145128(Gbrowse)
Chromosome: chr06 Position: 21145128 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1419 | 64.27% | 35.73% |
All Indica | 799 | 99.00% | 1.00% |
All Japonica | 497 | 3.42% | 96.58% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 99.73% | 0.27% |
Indica II | 213 | 97.65% | 2.35% |
Indica Intermediate | 211 | 99.05% | 0.95% |
Temperate Japonica | 335 | 2.09% | 97.91% |
Tropical Japonica | 94 | 7.45% | 92.55% |
Japonica Intermediate | 68 | 4.41% | 95.59% |
Group VI/Aromatic | 14 | 57.14% | 42.86% |
Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0621145128 | T->C | LOC_Os06g36130(LOC_Os06g36130.1) | Non-Synonymous SNP |