Detailed information of SNP:
|
SNP ID:
sf0621171427(Gbrowse)
Chromosome: chr06 Position: 21171427 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 94.26% | 5.74% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 488 | 83.61% | 16.39% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 331 | 88.52% | 11.48% |
| Tropical Japonica | 92 | 76.09% | 23.91% |
| Japonica Intermediate | 65 | 69.23% | 30.77% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0621171427 | C->A | INTERGENIC | None |