Detailed information of SNP:
|
SNP ID:
sf0621182899(Gbrowse)
Chromosome: chr06 Position: 21182899 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1376 | 82.19% | 17.81% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 455 | 47.03% | 52.97% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 313 | 28.75% | 71.25% |
| Tropical Japonica | 83 | 97.59% | 2.41% |
| Japonica Intermediate | 59 | 72.88% | 27.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0621182899 | A->G | INTERGENIC | None |