Detailed information of SNP:
|
SNP ID:
sf0621191726(Gbrowse)
Chromosome: chr06 Position: 21191726 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 55.25% | 44.75% |
| All Indica | 799 | 94.37% | 5.63% |
| All Japonica | 497 | 1.81% | 98.19% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 86.26% | 13.74% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0621191726 | G->A | INTERGENIC | None |