Detailed information of SNP:
|
SNP ID:
sf0621193088(Gbrowse)
Chromosome: chr06 Position: 21193088 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1398 | 58.37% | 41.63% |
| All Indica | 793 | 91.30% | 8.70% |
| All Japonica | 485 | 3.30% | 96.70% |
| Aus | 66 | 72.73% | 27.27% |
| Indica I | 373 | 94.37% | 5.63% |
| Indica II | 210 | 89.52% | 10.48% |
| Indica Intermediate | 210 | 87.62% | 12.38% |
| Temperate Japonica | 328 | 1.83% | 98.17% |
| Tropical Japonica | 93 | 9.68% | 90.32% |
| Japonica Intermediate | 64 | 1.56% | 98.44% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0621193088 | G->A | INTERGENIC | None |