Detailed information of SNP:
|
SNP ID:
sf0621202052(Gbrowse)
Chromosome: chr06 Position: 21202052 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1393 | 55.35% | 44.65% |
| All Indica | 774 | 86.43% | 13.57% |
| All Japonica | 497 | 2.41% | 97.59% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 369 | 86.99% | 13.01% |
| Indica II | 212 | 89.15% | 10.85% |
| Indica Intermediate | 193 | 82.38% | 17.62% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0621202052 | A->G | INTERGENIC | None |