Detailed information of SNP:
|
SNP ID:
sf0621260251(Gbrowse)
Chromosome: chr06 Position: 21260251 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1374 | 97.02% | 2.98% |
| All Indica | 791 | 97.35% | 2.65% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 36 | 55.56% | 44.44% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 209 | 96.65% | 3.35% |
| Indica Intermediate | 207 | 94.20% | 5.80% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 12 | 75.00% | 25.00% |
| Intermediate | 39 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0621260251 | C->T | INTERGENIC | None |