Detailed information of SNP:
|
SNP ID:
sf0621265886(Gbrowse)
Chromosome: chr06 Position: 21265886 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 64.10% | 35.90% |
| All Indica | 799 | 99.12% | 0.88% |
| All Japonica | 497 | 3.02% | 96.98% |
| Aus | 64 | 98.44% | 1.56% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0621265886 | G->T | INTERGENIC | None |