Detailed information of SNP:
|
SNP ID:
sf0621364923(Gbrowse)
Chromosome: chr06 Position: 21364923 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1169 | 52.10% | 47.90% |
| All Indica | 560 | 90.89% | 9.11% |
| All Japonica | 496 | 1.81% | 98.19% |
| Aus | 64 | 96.88% | 3.12% |
| Indica I | 249 | 89.96% | 10.04% |
| Indica II | 155 | 95.48% | 4.52% |
| Indica Intermediate | 156 | 87.82% | 12.18% |
| Temperate Japonica | 334 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 35 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0621364923 | G->A | INTERGENIC | None |