Detailed information of SNP:
|
SNP ID:
sf0621380867(Gbrowse)
Chromosome: chr06 Position: 21380867 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 58.96% | 41.04% |
| All Indica | 798 | 96.87% | 3.13% |
| All Japonica | 497 | 8.05% | 91.95% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 210 | 96.19% | 3.81% |
| Temperate Japonica | 335 | 9.25% | 90.75% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0621380867 | G->A | INTERGENIC | None |