Detailed information of SNP:
|
SNP ID:
sf0621397095(Gbrowse)
Chromosome: chr06 Position: 21397095 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 55.85% | 44.15% |
| All Indica | 795 | 95.85% | 4.15% |
| All Japonica | 495 | 1.21% | 98.79% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 209 | 95.22% | 4.78% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 92 | 3.26% | 96.74% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0621397095 | C->A | LOC_Os06g36450(LOC_Os06g36450.1) | Non-Synonymous SNP |