Detailed information of SNP:
|
SNP ID:
sf0621411589(Gbrowse)
Chromosome: chr06 Position: 21411589 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1317 | 87.32% | 12.68% |
| All Indica | 699 | 76.97% | 23.03% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 311 | 71.38% | 28.62% |
| Indica II | 190 | 77.89% | 22.11% |
| Indica Intermediate | 198 | 84.85% | 15.15% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0621411589 | G->C | INTERGENIC | None |