Detailed information of SNP:
|
SNP ID:
sf0621413630(Gbrowse)
Chromosome: chr06 Position: 21413630 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 98.22% | 1.78% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 487 | 94.87% | 5.13% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 328 | 97.26% | 2.74% |
| Tropical Japonica | 92 | 96.74% | 3.26% |
| Japonica Intermediate | 67 | 80.60% | 19.40% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0621413630 | G->T | LOC_Os06g36480(LOC_Os06g36480.1) | INTRON |