Detailed information of SNP:
|
SNP ID:
sf0621414005(Gbrowse)
Chromosome: chr06 Position: 21414005 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1405 | 64.70% | 35.30% |
| All Indica | 799 | 99.00% | 1.00% |
| All Japonica | 484 | 3.10% | 96.90% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 327 | 2.14% | 97.86% |
| Tropical Japonica | 91 | 7.69% | 92.31% |
| Japonica Intermediate | 66 | 1.52% | 98.48% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0621414005 | C->G | LOC_Os06g36480(LOC_Os06g36480.1) | INTRON |