Detailed information of SNP:
|
SNP ID:
sf0621415166(Gbrowse)
Chromosome: chr06 Position: 21415166 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1340 | 60.90% | 39.10% |
| All Indica | 796 | 98.74% | 1.26% |
| All Japonica | 494 | 1.01% | 98.99% |
| Aus | 7 | 57.14% | 42.86% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 208 | 99.04% | 0.96% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 92 | 1.09% | 98.91% |
| Japonica Intermediate | 67 | 1.49% | 98.51% |
| Group VI/Aromatic | 6 | 0.00% | 100.00% |
| Intermediate | 37 | 56.76% | 43.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0621415166 | T->G | LOC_Os06g36480(LOC_Os06g36480.1) | INTRON |