Detailed information of SNP:
|
SNP ID:
sf0621416291(Gbrowse)
Chromosome: chr06 Position: 21416291 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 78.95% | 21.05% |
| All Indica | 799 | 99.00% | 1.00% |
| All Japonica | 494 | 44.53% | 55.47% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 57.78% | 42.22% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 66 | 27.27% | 72.73% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0621416291 | G->T | LOC_Os06g36480(LOC_Os06g36480.1) | Synonymous |