Detailed information of SNP:
|
SNP ID:
sf0621417039(Gbrowse)
Chromosome: chr06 Position: 21417039 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 64.29% | 35.71% |
| All Indica | 799 | 75.97% | 24.03% |
| All Japonica | 492 | 54.88% | 45.12% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 92.53% | 7.47% |
| Indica II | 213 | 65.26% | 34.74% |
| Indica Intermediate | 211 | 57.35% | 42.65% |
| Temperate Japonica | 330 | 42.42% | 57.58% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 67.65% | 32.35% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0621417039 | C->T | LOC_Os06g36480(LOC_Os06g36480.1) | Non-Synonymous SNP |