Detailed information of SNP:
|
SNP ID:
sf0621431375(Gbrowse)
Chromosome: chr06 Position: 21431375 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 63.59% | 36.41% |
| All Indica | 797 | 75.91% | 24.09% |
| All Japonica | 497 | 53.72% | 46.28% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 92.27% | 7.73% |
| Indica II | 212 | 65.57% | 34.43% |
| Indica Intermediate | 210 | 57.14% | 42.86% |
| Temperate Japonica | 335 | 40.90% | 59.10% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 67.65% | 32.35% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0621431375 | A->T | LOC_Os06g36490(LOC_Os06g36490.1) | INTRON |