Detailed information of SNP:
|
SNP ID:
sf0621436026(Gbrowse)
Chromosome: chr06 Position: 21436026 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 89.82% | 10.18% |
| All Indica | 795 | 83.52% | 16.48% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 93.85% | 6.15% |
| Indica II | 213 | 79.34% | 20.66% |
| Indica Intermediate | 208 | 69.23% | 30.77% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0621436026 | C->T | LOC_Os06g36500(LOC_Os06g36500.1) | INTRON |