Detailed information of SNP:
|
SNP ID:
sf0621484270(Gbrowse)
Chromosome: chr06 Position: 21484270 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 78.27% | 21.73% |
| All Indica | 797 | 77.04% | 22.96% |
| All Japonica | 494 | 92.91% | 7.09% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 373 | 92.49% | 7.51% |
| Indica II | 213 | 68.08% | 31.92% |
| Indica Intermediate | 211 | 58.77% | 41.23% |
| Temperate Japonica | 334 | 94.01% | 5.99% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 66 | 93.94% | 6.06% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0621484270 | A->G | INTERGENIC | None |