Detailed information of SNP:
|
SNP ID:
sf0621486933(Gbrowse)
Chromosome: chr06 Position: 21486933 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1397 | 89.62% | 10.38% |
| All Indica | 777 | 85.71% | 14.29% |
| All Japonica | 497 | 94.57% | 5.43% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 93.57% | 6.43% |
| Indica II | 198 | 92.42% | 7.58% |
| Indica Intermediate | 206 | 65.05% | 34.95% |
| Temperate Japonica | 335 | 94.03% | 5.97% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0621486933 | A->T | INTERGENIC | None |