Detailed information of SNP:
|
SNP ID:
sf0621534656(Gbrowse)
Chromosome: chr06 Position: 21534656 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1382 | 52.89% | 47.11% |
| All Indica | 787 | 78.27% | 21.73% |
| All Japonica | 472 | 18.22% | 81.78% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 369 | 89.43% | 10.57% |
| Indica II | 207 | 79.71% | 20.29% |
| Indica Intermediate | 211 | 57.35% | 42.65% |
| Temperate Japonica | 324 | 8.33% | 91.67% |
| Tropical Japonica | 81 | 62.96% | 37.04% |
| Japonica Intermediate | 67 | 11.94% | 88.06% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0621534656 | T->C | INTERGENIC | None |