Detailed information of SNP:
|
SNP ID:
sf0621600444(Gbrowse)
Chromosome: chr06 Position: 21600444 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1388 | 97.12% | 2.88% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 467 | 91.43% | 8.57% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 313 | 93.93% | 6.07% |
| Tropical Japonica | 91 | 92.31% | 7.69% |
| Japonica Intermediate | 63 | 77.78% | 22.22% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0621600444 | G->T | LOC_Os06g36700(LOC_Os06g36700.1) | INTRON |