Detailed information of SNP:
|
SNP ID:
sf0621617939(Gbrowse)
Chromosome: chr06 Position: 21617939 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 91.37% | 8.63% |
| All Indica | 785 | 93.50% | 6.50% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 66 | 21.21% | 78.79% |
| Indica I | 372 | 96.77% | 3.23% |
| Indica II | 207 | 89.86% | 10.14% |
| Indica Intermediate | 206 | 91.26% | 8.74% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 95.70% | 4.30% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0621617939 | C->T | INTERGENIC | None |