Detailed information of SNP:
|
SNP ID:
sf0621624492(Gbrowse)
Chromosome: chr06 Position: 21624492 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 86.57% | 13.43% |
| All Indica | 791 | 87.86% | 12.14% |
| All Japonica | 495 | 98.59% | 1.41% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 373 | 92.76% | 7.24% |
| Indica II | 209 | 86.12% | 13.88% |
| Indica Intermediate | 209 | 80.86% | 19.14% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 92 | 96.74% | 3.26% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0621624492 | C->T | LOC_Os06g36730(LOC_Os06g36730.1) | Non-Synonymous SNP |