Detailed information of SNP:
|
SNP ID:
sf0621625150(Gbrowse)
Chromosome: chr06 Position: 21625150 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 87.10% | 12.90% |
| All Indica | 793 | 87.89% | 12.11% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 65 | 9.23% | 90.77% |
| Indica I | 374 | 93.05% | 6.95% |
| Indica II | 212 | 84.43% | 15.57% |
| Indica Intermediate | 207 | 82.13% | 17.87% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0621625150 | G->T | LOC_Os06g36730(LOC_Os06g36730.1) | Synonymous |